Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015944146.1_cds_XP_016487079.1_77854
CDS Infomation

[gene=LOC107807246] [db_xref=GeneID:107807246] [protein=clustered mitochondria protein-like] [partial=5'] [protein_id=XP_016487079.1] [location=join(<4..94,245..346,1587..1722,1889..2017,3180..3570,4475..4750,5716..5841,6026..6166,7019..7141,7233..7403,7545..7631,8113..8247,8787..8933,9016..9084,9987..10145,10311..10367,10447..10487,10609..10728,10865..11174,11268..11375,11467..11538,11939..12397)] [gbkey=CDS]
Sequence

AATGTTCTTGATCCAAGGTCTAATAAAACTGGTTCAGAAGCAACTACTCTTATTGGGCTC
TTTCAAAAGATTAGCTCCAGATTTAAGAAAGCTTTTCGTGAAATATTGGAGCGGAAGGCT
TCTGCACATCCTTTTGAGAATGTTCAATCTATGCTACCACCAAATTCGTGGCTTGGGTCA
TATCCTATCCCTGATCACAAACGTGATGCAGCACGGGCAGAGAATGCACTTACACTTTCT
TTTGGAAGTGAGCTGATTGGCATGCAAAGGGATTGGAATGAAGAGTTACAATCTTGTCGG
GAATTCCCCCATACAAACCCCCAGGAAAGGATACTGCGAGATAGGGCCCTGTACAAAGTC
AGTTCGGACTTTGTAGATGCTGCAATTAGTGGTGCTATTGGAGTTATCAACAGGTGTATT
CCCCCAATTAATCCAACTGATCCAGAGTGCTTTCATATGTACGTTCACAATAATATATTC
TTCAGCTTTGCTGTTGATGCGGATCTTGAGCAACTGTCCCGAAAGCAGGGAGCTGATTCT
AAAGTTGAGGGCACAGGCTTATTACGTAGTTTGTCGGAAAAGACCTCCAACAATTTGTCA
CAGGGAGCCTCTGAAGTCTCTAATGGAGATGAGCATGGCGGCCCAGTTGTAGAAGCTGTA
AACATCAACTTGGATTGTCCTCCTGGAGTGCCTGGTGAAACTCAGTTGGCAGAAAGTGAG
CAAGCCACTTATGCAAGTGCGAATAATGACTTGAAAGGCACAAAATCATATCAGGAAGCT
GATGTCCCTGGATTATACAACCTTGCTATGGCGATAATTGATTATAGAGGTCATAGAGTG
GTGGCACAGAGTGTTTTACCTGGTATCCTTCAAGGTGACAAATCAGATTCCCTCTTATAC
GGGTCTGTTGATAATGGCAAGAAAATCTGCTGGAGTGACGAGTTCCATTCCAAGGTACCA
GTGGACCTTAATTTTTTGTTCACCTTCTTTTTTTCCTTGTATGGCTTGCACAACAATTTT
AGGATGTTTGTGGAAAGTATAAGGTTTATTAGGATTACTTGCTGGGTTTGTCATGATTCT
TTAACTATCATACTTTTTTTTTTTCAAAGACAAACCACTAACACATCTTATGTGGTTTTC
AGGCATTATCTGTTGGACTTGATGAGAGTCACTCCTCGTGATGCAAATTATAGTGGTTCA
GGTTCCAGATTTTGTATTTTGCGACCTGAATTGATAACTGCGTTTTGCCAAGCTGAAGTT
GCTGAGAGGTCAAAATCGAAGTGCGAGTCAGAGGGGGAGGTACCAGTGGCCTCTGATTCT
TCAACGGTAAATAACACTGAAGAATTACAAACAACCGATGGCGTTGCCCCAGCTGAAGTC
GACAGTAATAAGGGAGAAAAAAGTGTGAAGGATGCTGGTAACAACTGCTGTTCTCACTCG
GGAAGAACGGATACTGAGGATATACTTTTCAATCCTAACGTCTTTACAGATTTTAAGTTG
GCAGGGAGTGAAGAGGAGATAGTTGCTGACCAAGAACTTGTGAAGAAAGTGAGTTTGTAT
CTGAAAGACACTGTGCTTCCGAAGTTTATTCAAGATCTCTGCACACTTGAAGTTTCACCC
ATGGATGGGCAAACTTTAACTGAGGCACTCCATGCGCATGGAATTAATTTGCGCTATCTG
GGAAAAGTGGCTGAGGGGACCAGGAACTTGCCTCATTTATGGGATCTTTGTTCCAATGAG
ATTGTTGTCAGATGTGCGAAGCACATACTCAAGGATGTGCTGAGGGATGCTGAGGACCAT
GATCTTGCAAACACAATCTCACATTTTTGCAACTGTTTGATTGGAAATATTCAAAGTGTA
TCTAATAAAGGTGGCGCCAACAGTGCACTTTCTAAAAACCAAAAGAAGGACCACATCAGC
AACCAGCAAAAGTCGTCCAAACAAGGAAAGCGAAAAAATGTAGGATCTGCCAAGAAGAAG
CTGTCCTCCTATTTGAATATTACCTCTGATAGTTTGTGGTCTGATATCCAGGAATTTGCG
AAGCTAAAGTATCAGTTCGAGTTGCCTGAGGATGCAAAAATGCTCGTAAAGAAAATTCCA
GTTGTACGCAATCTTTGTCAGAAGGTAGGTGTGACCGTTGCAGCTCGTAAATATGACCTT
GTCTCTGCTGCACCTTTTCAAGCATCAGATATTATGAATCTCCAACCAGTGGTGAAGCAT
TCTATCCCAGTTAGTTCAGAAGCTAAGGACCTTGTAGAAACAGGGAAGGCTCAATTAGCT
GAGGGTTTGCTTAGTGAGGCCTACACTTTATTTTCTGAAGCATTCACAATACTTCAGCAG
GTGACGGGTCCTATGCACCGTGAGGTTGCCAATTGTTGTCGCTACCTTGCTATGGTTCTG
TATCATGCTGGAGATATGGCTGGCGCTATAATGCAACAGCACAAGGAACTTATCATAAAT
GAAAGATGCCTTGGACTGGACCACCCTGACACTGCGCACAGTTATGGAAACATGGCCCTT
TTCTACCATGGTCTTAACCAAACAGAACTTGCATTGAGGCACATGTCACGGGCCTTGCTT
CTGCTTGGCTTGTCATCAGGTCCTGATCATCCGGATGTTGCTGCAACATTTATAAATGTT
GCGATGATGTACCAAGATATAGGAAAGATGGATACAGCACTTCGTTATCTCCAAGAAGCA
TTGAAAAAGAATGAACGGTTGCTCGGGGAGGAACATATTCAGACTGCTGTTTGTTATCAT
GCTCTGGCAATTGCATTCAATTGTATGGGTGCTTTCAAGCTCTCACACCAGCATGAAAAG
AAAACTTATGACATACTAGCCAAACAGCTCGGAGAGGAGGATTCAAGGACACGTGATTCT
CAGAACTGGATGAAAACTTTTAAGATGCGTGAGATACAGATGAATGCGCAAAAGCAGAAA
GGTCAATCTCTGAATGTGGCTTCTGCACAGAAGGCTTATGATATTTTGAAGGCTCATCCT
AGCCTGCTACACGCATTTCAAGCTGCTGCTGGAGGTGCTGGTGTTGGTGGCATGAACCAA
TCATTAAGTTCTGCAGTACTTGGTGATGGGCTTCCTCGAGGAAGAGGAGTTGATGAAAGA
GCTGCACGAGCTGCTGCTGAAGTAAGGAAAAAAGCTGTAGCAAGGGGTCTTCTGGTACGT
CCCAGTGGTGTTCCTGCAGCGACTTTACCCCCTCTTACCCAGCTACTCAATGTAATAAAC
TCTGGCGCCGCGCCGGATGCTGCAAATGCTAATGAAACTAATGAAGAAAAGGAAGAAGTG
AATGGCCATTCTTCTGATGGACCTGGAGTAGATGCCCAAGCAGACCATTCCAAAACACCA
GGACAAGATCAAACTCCTGTTGGTTTAGGAACAGGTTTGGTGGGGTTGGATGCCAAGAAA
CAGAAATCAAAAGGGAAATCTGCATCTTGA

Peptide Sequence

PEP ID

XP_016487079.1
PEP Infomation

PREDICTED: clustered mitochondria protein-like, partial [Nicotiana tabacum]
Sequence

NVLDPRSNKTGSEATTLIGLFQKISSRFKKAFREILERKASAHPFENVQSMLPPNSWLGS
YPIPDHKRDAARAENALTLSFGSELIGMQRDWNEELQSCREFPHTNPQERILRDRALYKV
SSDFVDAAISGAIGVINRCIPPINPTDPECFHMYVHNNIFFSFAVDADLEQLSRKQGADS
KVEGTGLLRSLSEKTSNNLSQGASEVSNGDEHGGPVVEAVNINLDCPPGVPGETQLAESE
QATYASANNDLKGTKSYQEADVPGLYNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLY
GSVDNGKKICWSDEFHSKVPVDLNFLFTFFFSLYGLHNNFRMFVESIRFIRITCWVCHDS
LTIILFFFQRQTTNTSYVVFRHYLLDLMRVTPRDANYSGSGSRFCILRPELITAFCQAEV
AERSKSKCESEGEVPVASDSSTVNNTEELQTTDGVAPAEVDSNKGEKSVKDAGNNCCSHS
GRTDTEDILFNPNVFTDFKLAGSEEEIVADQELVKKVSLYLKDTVLPKFIQDLCTLEVSP
MDGQTLTEALHAHGINLRYLGKVAEGTRNLPHLWDLCSNEIVVRCAKHILKDVLRDAEDH
DLANTISHFCNCLIGNIQSVSNKGGANSALSKNQKKDHISNQQKSSKQGKRKNVGSAKKK
LSSYLNITSDSLWSDIQEFAKLKYQFELPEDAKMLVKKIPVVRNLCQKVGVTVAARKYDL
VSAAPFQASDIMNLQPVVKHSIPVSSEAKDLVETGKAQLAEGLLSEAYTLFSEAFTILQQ
VTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL
FYHGLNQTELALRHMSRALLLLGLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEA
LKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILAKQLGEEDSRTRDS
QNWMKTFKMREIQMNAQKQKGQSLNVASAQKAYDILKAHPSLLHAFQAAAGGAGVGGMNQ
SLSSAVLGDGLPRGRGVDERAARAAAEVRKKAVARGLLVRPSGVPAATLPPLTQLLNVIN
SGAAPDAANANETNEEKEEVNGHSSDGPGVDAQADHSKTPGQDQTPVGLGTGLVGLDAKK
QKSKGKSAS

Transcript Sequence

Gene sequence data has not been registered.